Input sequence

Protein name Collagen alpha-1(V) chain
Organism Rattus norvegicus Length 1840
Disorder content 75.3% ProS content 70.2%
IDEAL NA UniProt Q9JI03

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 1840 1-12 13-30 31-38 39-49 50-53 54-248 249-1609 1610-1840 13-30 39-49 54-248 1610-1840 1-12 31-38 50-53 249-1609 1-12 31-38 50-53 261-294 302-310 324-373 379-424 441-464 471-529 556-1579 1588-1609 1630-1839 73-208 1630-1839 41-242 1627-1838 106-229 471-530 556-614 615-674 675-734 735-794 795-854 855-914 915-974 975-1034 1035-1094 1098-1157 1158-1217 1218-1277 1278-1337 1338-1397 1398-1457 1458-1517 1518-1577 1627-1838 1600-1785 41-231 57-245 1625-1684 9-37 259-288 300-314 335-352 375-391 414-425 462-525 547-560 564-588 591-621 645-700 714-759 762-795 828-864 897-927 951-981 986-1035 1077-1119 1136-1167 1178-1195 1217-1245 1251-1423 1452-1482 1487-1497 1523-1572 13-30 4ae2A(1-212) 6e-42 42.66% 2uurA(39-175) 1e-08 27.97% 4ae2A(1-212) 4e-44 41.86% 2uurA(12-210) 3e-22 22.01% PF01410(1-209) 2e-60 54.63% PF02210 3.7e-13 54.3% PF01391 1.4e-05 22.8% PF01391 5.9e-06 30.0% PF01391 6.5e-16 63.5% PF01391 4.2e-15 60.8% PF01391 1e-09 42.8% PF01391 3.7e-08 37.7% PF01391 1.5e-09 42.3% PF01391 7.6e-15 59.9% PF01391 1e-13 56.1% PF01391 3.9e-12 50.9% PF01391 2.1e-11 48.5% PF01391 6e-09 40.3% PF01391 9.2e-10 43.0% PF01391 3.6e-10 44.4% PF01391 6.9e-11 46.8% PF01391 1.9e-10 45.3% PF01391 1.2e-11 49.3% PF01391 7.9e-10 43.3% PF01410 9.8e-141 478.1% 1j83A(9-180) 1e-44 16.67% 1z78A1(5-195) 1e-22 15.42% b.29.1 3.4e-35 85.4% d.171.1 0.0005 12.1%

Sequence

MDVHTRWKAPRPGAPLLSSPLLLLLLLLWAPPPSRAAQPTDLLEMLDFHNLPSGVTKTTG
FCATRRSSKEPDVAYRVSKDAQLSMPTKQLYPESDFPEDFSILTTVKAKKGSQAFLVSVY
NEQGIQQLGLELGRSPVFLYEDHTGKPGPEEYPLFPGINLSDGKWHRIAISVYKKNVTLI
LDCKKKITKFLNRGDHPIIDVNGIIMFGSRILDDEIFEGDIQQLLFVSDHRAAYDYCEHY
SPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYEDPEDPGKEPAPSQKPVEAARE
TTEVPEEQTQPPSEAPTVPETSDTAGKEDNPGIGDYDYVPTDDYYTTSPYEDFGYGEGVE
NPDQPTNPDSGAEIPTSTSVTSNSSNPAPSPEEGKDDLGGEFTEETIKNLDENYYDPYFD
PDSDSNVSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG
LPGPPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM
VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQG
PPGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGLPG
DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG
PPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQG
PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRG
EDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKG
GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG
FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG
PPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEG
PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVPGEEGPQGPAGRDGLQG
PVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPTGQPGPSGADG
EPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG
PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPLGPKGERGEKGEAGPSG
AAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG
PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDG
LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG
EKGDRGLPGPQGSSGPKGEQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG
HPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEEIFGSLNSL
KLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGS
TCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASA
QQNITYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKT
VLEIDTPKVEQVPIVDIMFTDFGEASQKFGFEVGPACFLG

Region:1-1840
Length:1840aa
Label:Full sequence
Reset:click