Input sequence

Protein name Retrovirus-related Pol polyprotein from transposon RE1
Organism Arabidopsis thaliana Length 1466
Disorder content 21.8% ProS content 16.1%
IDEAL NA UniProt Q94HW2

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR 0 1466 1-18 19-58 59-68 69-210 211-329 330-446 447-450 451-485 486-500 501-754 755-759 760-926 927-1466 19-58 69-210 330-446 451-485 501-754 927-1466 1-18 211-329 486-500 760-926 222-230 235-302 308-312 486-500 760-891 912-918 500-684 523-747 1260-1295 997-1206 544-634 519-679 971-1228 1236-1463 965-1318 523-684 515-682 982-1418 229-254 793-806 810-828 836-913 3l2rA(87-266) 1e-08 30.0% 1ex4A(2-212) 2e-45 7.11% 1ezeA(2-37) 2e-12 22.22% PF07727(4-211) 1e-62 52.86% PF00665(24-115) 0.0002 31.18% PF00665 2.5e-46 164.5% PF07727 1.6e-166 563.8% 1zt2B1(3-185) 7e-28 9.21% 1ihpA(59-409) 1e-25 9.29% 1b92A(2-140) 1e-10 12.2% c.55.3 8.2e-35 122.1% e.8.1 4.1e-45 146.8%

Sequence

MAAHAEELVLNNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPA
TIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANP
SYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEY
KPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNG
NRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLS
SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDV
MVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPAS
FQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILN
SVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHD
NYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL
WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYL
INRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYS
LTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPT
RTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQ
PTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPT
PPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAI
QALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKAR
LVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVY
MSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR
GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL
SQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRP
DISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGD
KDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI
RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLAD
TLTKPLSRTAFQNFASKIGVTRVPPS

Region:1-1466
Length:1466aa
Label:Full sequence
Reset:click