Input sequence

Protein name Short-wave-sensitive opsin 1
Organism Rattus norvegicus Length 346
Disorder content 10.1% ProS content 2.9%
IDEAL NA UniProt Q63652

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam HMMER:Pfam RPS-BLAST:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 346 1-6 7-234 235-238 239-321 322-346 7-234 239-321 1-6 235-238 322-346 1-6 343-346 7-293 286-309 1-294 50-301 49-301 3-328 16-342 330-343 34-56 69-91 106-128 148-170 200-222 249-271 281-303 1f88A(9-294) 3e-19 25.17% 1fdfA(1-24) 6e-05 75.0% 1f88A(4-295) 6e-50 23.65% PF00001(1-253) 3e-25 28.68% PF00001 3.3e-67 233.9% 1f88A(6-329) 2e-26 41.77% f.13.1 4.2e-75 250.3%

Sequence

MSGEDEFYLFQNISSVGPWDGPQYHIAPVWAFHLQAAFMGFVFFAGTPLNATVLVATLHY
KKLRQPLNYILVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLVTG
WSLAFLAFERYLVICKPFGNIRFNSKHALTVVLITWTIGIGVSIPPFFGWSRFIPEGLQC
SCGPDWYTVGTKYRSEHYTWFLFIFCFIIPLSLICFSYFQLLRTLRAVAAQQQESATTQK
AEREVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLYLRLVTIPAFFSKSSCVYNPII
YCFMNKQFRACILEMVCRKPMTDESDMSGSQKTEVSTVSSSKVGPH

Region:1-346
Length:346aa
Label:Full sequence
Reset:click