Input sequence

Protein name RNA polymerase II-associated protein 1
Organism Rattus norvegicus Length 1400
Disorder content 30.2% ProS content 15.2%
IDEAL NA UniProt Q3T1I9

Prediction

Order Disorder ProS RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam SEG:LCR 0 1400 1-360 361-510 511-533 534-610 611-617 618-620 621-753 754-759 760-885 886-906 907-1327 1328-1334 1335-1390 1391-1400 361-510 534-610 621-753 760-885 907-1327 1335-1390 1-360 511-533 618-620 754-759 886-906 1391-1400 1-36 56-62 95-118 125-138 150-159 204-208 225-273 292-296 324-350 511-524 895-906 1391-1400 225-263 366-429 224-272 362-433 59-74 383-392 443-465 468-480 507-517 731-747 1088-1105 1373-1390 PF08621(2-40) 3e-06 61.54% PF08620(5-72) 3e-06 54.41% PF08621 8.1e-19 73.1% PF08620 8.1e-38 136.2%

Sequence

MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAHPDQLPPQDHRDVVMLD
SLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAVLSKIVERDTSSVTVT
LPVPSGVAFPPVFHRSQERQVKPAASSKRSIFAQEIAARRVSDNRAPSAEQVVPSPDAPE
GAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQAAVQEVQTIHEENVARLQAMDP
EEILKEQQQLLAQLDPSLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCT
GESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQ
ERMQARFSLQGELLEPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALH
VLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVA
PGDEELLDSTFSWYHGASVFPMMPSHDDKEDEDEDEELTKEKVNRKTPEEGSRPPPDLAR
HDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMET
IVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAGRNIAARLLSSFDVRSRLCRF
IAEAPRDLALPFEEAEILTTEAFRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTH
PLQPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITWTHVSGLKPLVEP
CLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLL
PLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPF
LTALLSLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYH
LQYLVLSLAQKAATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLP
ENASGGPEAADFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTS
QALYRGELPRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVL
QWVLVLESWRPEALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLP
NLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHV
GVLRALGLPLAQLPVPLECYTEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVN
SFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRL
RQQYLQTLPTEVLQNGGFKT

Region:1-1400
Length:1400aa
Label:Full sequence
Reset:click