Input sequence

Protein name Collagen alpha-1(VI) chain
Organism Mus musculus Length 1025
Disorder content 36.5% ProS content 35.1%
IDEAL NA UniProt Q04857

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR 0 1025 1-23 24-141 142-147 148-265 266-311 312-322 323-593 594-620 621-631 632-817 818-840 841-878 879-884 885-1025 24-141 148-265 312-322 594-620 632-817 841-878 885-1025 1-23 266-311 323-593 621-631 818-840 1-23 266-311 323-593 626-631 818-831 614-1009 611-807 824-1009 34-250 450-544 318-361 36-208 614-767 36-226 256-315 331-390 394-453 457-516 531-591 614-794 826-1014 31-248 608-807 822-1022 446-543 273-362 30-248 608-813 817-1022 3-14 255-271 298-316 363-382 384-412 414-445 487-505 546-560 571-590 4cn9A(10-375) 2e-09 22.93% 1lfaA(1-180) 3e-19 16.34% 1lfaA(2-168) 1e-15 10.53% 1lfaA(2-183) 4e-11 15.07% 2pneA(2-80) 6e-09 27.0% 2pneA(2-45) 3e-08 43.18% PF00092(1-153) 6e-07 30.06% PF00092(1-141) 0.0008 26.92% PF00092 9.8e-25 92.8% PF01391 5.3e-11 47.1% PF01391 2.9e-12 51.4% PF01391 2.9e-10 44.7% PF01391 5.8e-11 47.0% PF01391 0.0001 7.2% PF00092 1.6e-32 118.6% PF00092 2e-28 105.1% 1auqA(12-207) 3e-20 14.22% 1ao3A(1-187) 7e-19 16.36% 1aoxA(3-194) 9e-18 17.56% 1af0A1(144-221) 5e-05 9.18% 1af0A1(145-222) 5e-05 10.0% c.62.1 1.1e-37 125.0% c.62.1 1.9e-34 112.5% c.62.1 6.3e-29 94.4%

Sequence

MRLAHALLPLLLQACWVATQDIQGSKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVDK
VKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDELKASVDAVK
YFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKH
LGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEEVISQTIDTIVDMIKN
NVEQVCCSFECQAARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMK
GEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGPK
GDAGAFGMKGEKGEAGADGEAGRPGNSGSPGDEGDPGEPGPPGEKGEAGDEGNAGPDGAP
GERGGPGERGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGIPGDSGEAGPIGPKGYRGDE
GPPGPEGLRGAPGPVGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGLNGTKG
YPGLKGDEGEVGDPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDIIM
KMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSKDELVKFEPGQSHAG
VVQYSHNQMQEHVDMRSPNVRNAQDFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTQNN
RIALVITDGRSDTQRDTTPLSVLCGADIQVVSVGIKDVFGFVAGSDQLNVISCQGLSQGR
PGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPADITILLDSSASVGSH
NFETTKVFAKRLAERFLSAGRADPSQDVRVAVVQYSGQGQQQPGRAALQFLQNYTVLASS
VDSMDFINDATDVNDALSYVTRFYREASSGATKKRVLLFSDGNSQGATAEAIEKAVQEAQ
RAGIEIFVVVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPNYQALLRGVLYQTVSR
KVALG

Region:1-1025
Length:1025aa
Label:Full sequence
Reset:click