Input sequence

Protein name Class II histocompatibility antigen, M alpha chain
Organism Mus musculus Length 261
Disorder content 14.6% ProS content 11.5%
IDEAL NA UniProt P28078

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 261 1-32 33-220 221-227 228-255 256-261 33-220 228-255 1-32 256-261 9-32 256-261 40-220 40-225 41-124 133-214 136-217 42-110 40-121 121-220 11-21 231-253 1k8iA(1-181) 4e-104 98.9% 1hdmA(2-184) 9e-52 75.81% PF00993 7.7e-11 46.6% PF07654 7.6e-23 86.5% 1d2oA1(4-82) 8e-10 13.41% 1a6aA2(1-71) 8e-07 25.35% d.19.1 1.1e-25 87.1% b.1.1 2.1e-17 53.5%

Sequence

MEHEQKSGAVLLRLLRLLWLLPHSWAVLEASTPVLWDDPQNHTFRHTLFCQDGIPNIGLS
ETYDEDELFSFDFSQNTRVPRLPDFAEWAQGQGDASAIAFGKSFCEMLMREVSPKLEGQI
PVSRGLSVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVNWQLHSAPVEGASPTSISAVD
GLTFQAFSYLNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQNALPSDLLENALCGVAFALG
VLGTIIGIVFFLCSQRPCSGD

Region:1-261
Length:261aa
Label:Full sequence
Reset:click