Input sequence

Protein name Probable aminoglycoside efflux pump
Organism EColi Length 1037
Disorder content 1.4% ProS content 0.0%
IDEAL NA UniProt P24177

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 1037 1-501 502-508 509-1030 1031-1037 1-501 509-1030 502-508 1031-1037 1-1003 1-1033 1-1026 1-1027 816-1033 321-498 61-215 760-857 566-670 182-273 228-330 38-134 135-330 296-498 566-672 673-857 805-1033 474-488 545-558 10-32 340-362 366-388 438-460 470-492 538-560 868-890 897-919 924-946 972-994 1004-1026 4dx5A(1-1006) 0.0 47.61% 4dx5A(1-1036) 0.0 46.62% PF00873(1-1013) 0.0 42.64% PF00873 0.0 2147.6% 1iwgA8(3-222) 1e-44 60.91% 1iwgA7(22-199) 1e-36 84.83% 1mwkA2(17-162) 2e-32 12.66% 1iwgA4(2-97) 2e-26 36.73% 1iwgA3(1-105) 7e-26 50.48% 1iwgA5(1-92) 7e-26 58.7% 1iwgA2(2-104) 9e-21 32.69% d.58.44 6.3e-28 102.6% d.58.44 2e-23 80.8% f.35.1 5e-48 170.6% d.58.44 2.2e-32 115.6% d.58.44 1.5e-30 107.5% f.35.1 2.4e-45 154.5%

Sequence

MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENT
VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ
AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS
QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL
QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEM
ATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQ
NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM
SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVL
SVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSLRW
IVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTH
EKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEA
RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENPELTRVRHNGLD
DSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRML
PDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD
IMESLVKQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVM
LVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEA
TLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVP
LFFVLVRRRFPLKPRPE

Region:1-1037
Length:1037aa
Label:Full sequence
Reset:click