Input sequence

Protein name RT1 class I histocompatibility antigen, AA alpha chain
Organism Rattus norvegicus Length 371
Disorder content 17.0% ProS content 14.3%
IDEAL NA UniProt P16391

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 371 1-15 16-300 301-313 314-336 337-371 16-300 314-336 1-15 301-313 337-371 4-15 308-313 337-371 25-299 75-300 26-202 217-293 25-203 216-295 342-370 26-205 206-301 25-205 208-301 9-18 172-185 315-348 314-336 1ed3A(1-275) 2e-157 100.0% 1f11B(3-218) 1e-68 11.95% PF00129(2-176) 4e-62 76.84% PF07654(5-81) 1e-26 70.13% PF00129 6.3e-145 492.0% PF07654 4.1e-28 104.0% PF06623 1.3e-14 59.2% 1cd1A2(1-179) 6e-50 14.21% 1dr9A2(1-95) 1e-21 17.53% d.19.1 2.2e-85 275.3% b.1.1 4.1e-29 100.6%

Sequence

MEAMAPRTLLLLLAAALAPTQTRAGSHSLRYFYTAVSRPGLGEPRFIAVGYVDDTEFVRF
DSDAENPRMEPRARWMEREGPEYWEQQTRIAKEWEQIYRVDLRTLRGYYNQSEGGSHTIQ
EMYGCDVGSDGSLLRGYRQDAYDGRDYIALNEDLKTWTAADFAAQITRNKWERARYAERL
RAYLEGTCVEWLSRYLELGKETLLRSDPPEAHVTLHPRPEGDVTLRCWALGFYPADITLT
WQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQRWEP
SPSTDSNMETTVIYVILGAVAMIGAVAIIGAMVAVVRRRKRNTGGKGGDYAPAPGRDSSQ
SSDVSLPDCKA

Region:1-371
Length:371aa
Label:Full sequence
Reset:click