Input sequence

Protein name Sodium channel protein type 2 subunit alpha
Organism Rattus norvegicus Length 2005
Disorder content 23.7% ProS content 18.9%
IDEAL NA UniProt P04775

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR COILS:coiledCoil TMHMM:TMhelix 0 2005 1-4 5-27 28-54 55-477 478-489 490-525 526-709 710-989 990-1000 1001-1016 1017-1021 1022-1026 1027-1163 1164-1506 1507-1512 1513-1875 1876-1892 1893-1932 1933-2005 5-27 55-477 490-525 710-989 1001-1016 1022-1026 1164-1506 1513-1875 1893-1932 1-4 28-54 478-489 526-709 990-1000 1017-1021 1027-1163 1507-1512 1876-1892 1933-2005 1-4 28-43 49-54 478-485 526-621 637-658 667-673 690-709 998-1000 1017-1021 1027-1032 1044-1122 1131-1151 1507-1512 1876-1892 1933-1961 1972-2005 1788-1929 1486-1506 157-177 1780-1932 1486-1506 157-177 1246-1472 158-281 1566-1727 793-970 353-424 999-1218 525-710 157-424 793-982 995-1218 1244-1472 1565-1775 1526-1615 755-840 1204-1289 171-271 1579-1656 113-433 726-1034 1078-1481 1515-1803 433-448 450-471 484-520 846-858 886-898 971-993 1120-1133 1150-1169 1304-1319 1628-1640 1750-1768 1966-1974 1980-1999 425-477 490-525 126-148 191-213 220-242 252-274 403-425 755-777 790-812 827-849 881-903 923-940 960-982 1208-1227 1248-1270 1280-1302 1329-1351 1451-1473 1532-1551 1561-1583 1590-1612 1663-1685 1753-1775 4jpzB(1-142) 4e-74 97.89% 1byyA(1-21) 8e-05 100.0% 1qg9A(1-21) 0.0002 100.0% 4dckA(1-153) 1e-51 77.78% 1byyA(1-21) 5e-06 100.0% 1qg9A(1-21) 0.0002 100.0% PF00520(3-198) 6e-35 41.41% PF00520(2-126) 7e-20 39.23% PF00520(2-171) 4e-18 39.31% PF00520(1-186) 6e-13 37.43% PF00520(128-198) 6e-11 44.44% PF06512(3-219) 3e-25 39.11% PF11933(40-219) 5e-24 41.62% PF00520 9e-71 245.7% PF00520 5.1e-62 216.6% PF06512 1.3e-128 437.8% PF00520 2.6e-71 247.5% PF00520 6e-67 233.0% 1orsC(1-91) 2e-19 9.89% 1orsC(2-87) 2e-13 11.49% 1orsC(2-85) 2e-10 12.79% 2e9xC1(1-103) 9e-13 12.39% 2e9xC1(1-82) 3e-06 13.41% f.14.1 1.8e-29 102.3% f.14.1 1.8e-31 109.3% f.14.1 1.3e-41 144.5% f.14.1 7.6e-38 131.5%

Sequence

MARSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGK
SLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAISRFSATSALYILTPFNPIRK
LAIKILVHSLFNVLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRNPWNWLDFTVITFAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFEINITSFFNNSL
DWNGTAFNRTVNMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGI
GVFSESSSVASKLSSKSEKELKNRRKKKKQKEQAGEEEKEDAVRKSASEDSIRKKGFQFS
LEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFNFKGRVKDIGSENDFADDEHST
FEDNDSRRDSLFVPHRHGERRPSNVSQASRASRGIPTLPMNGKMHSAVDCNGVVSLVGGP
SALTSPVGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPSRQRAMSMASILTNTMEELEE
SRQKCPPCWYKFANMCLIWDCCKPWLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEH
YPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELGL
ANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGM
QLFGKSYKECVCKISNDCELPRWHMHHFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCL
TVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDFVKRK
IREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIGS
SVEKYVVDESDYMSFINNPSLTVTVPIALGESDFENLNTEEFSSESDMEESKEKLNATSS
SEGSTVDIGAPAEGEQPEAEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRKT
CYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLLK
WVAYGFQMYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRF
EGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSVV
NNYSECQALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVELQ
PKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNA
MKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEMT
NILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFV
SPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMS
NFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPGS
SVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFA
FTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIVIQRAYRRYL
LKQKVKKVSSIYKKDKGKEDEGTPIKEDIITDKLNENSTPEKTDVTPSTTSPPSYDSVTK
PEKEKFEKDKSEKEDKGKDIRESKK

Region:1-2005
Length:2005aa
Label:Full sequence
Reset:click