Input sequence

Protein name Sodium channel protein type 1 subunit alpha
Organism Rattus norvegicus Length 2009
Disorder content 27.5% ProS content 20.6%
IDEAL NA UniProt P04774

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR COILS:coiledCoil TMHMM:TMhelix 0 2009 1-6 7-24 25-73 74-468 469-724 725-999 1000-1007 1008-1024 1025-1030 1031-1036 1037-1174 1175-1884 1885-1902 1903-1937 1938-2009 7-24 74-468 725-999 1008-1024 1031-1036 1175-1884 1903-1937 1-6 25-73 469-724 1000-1007 1025-1030 1037-1174 1885-1902 1938-2009 1-6 25-39 48-73 469-469 526-545 554-616 633-724 1025-1030 1037-1047 1058-1129 1142-1162 1889-1902 1938-1971 1977-2009 1798-1939 1496-1516 156-176 1790-1942 1496-1516 156-176 1256-1482 157-280 1576-1726 802-978 351-422 1008-1228 522-719 156-422 802-991 1004-1228 1254-1482 1575-1785 1536-1625 764-849 1214-1299 170-270 1589-1666 9-431 751-1043 1086-1491 1494-1813 23-52 431-464 479-515 649-665 855-867 895-907 980-1002 1081-1091 1130-1155 1314-1329 1638-1650 1760-1778 1837-1849 423-468 125-147 190-212 219-241 251-273 401-423 764-786 799-821 886-908 969-991 1218-1237 1258-1280 1290-1312 1339-1361 1461-1483 1542-1561 1571-1593 1600-1622 1673-1695 1763-1785 4jpzB(1-142) 2e-60 88.03% 1byyA(1-21) 8e-05 100.0% 1qg9A(1-21) 0.0004 95.24% 4dckA(1-153) 1e-46 75.82% 1byyA(1-21) 5e-06 100.0% 1qg9A(1-21) 0.0003 95.24% PF00520(3-198) 2e-35 41.85% PF00520(2-126) 1e-20 40.77% PF00520(2-160) 2e-17 41.36% PF00520(1-185) 2e-12 36.56% PF00520(128-198) 6e-11 44.44% PF06512(3-219) 2e-28 42.98% PF11933(40-219) 4e-28 44.5% PF00520 7.7e-73 252.6% PF00520 8.4e-60 209.3% PF06512 1.8e-123 420.8% PF00520 8.2e-73 252.5% PF00520 1.6e-65 228.3% 1orsC(1-91) 1e-17 7.69% 1orsC(2-87) 3e-13 11.49% 1orsC(2-85) 2e-10 12.79% 2e9xC1(1-103) 2e-13 12.39% 2e9xC1(1-82) 3e-06 13.41% f.14.1 5e-32 111.2% f.14.1 1.2e-30 106.4% f.14.1 1.4e-40 141.0% f.14.1 2.8e-38 133.0%

Sequence

MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNVTTDY
NGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAATASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAGLPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIRNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGVAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNRKDNCTSNHTTEIGKDLDCLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVMEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDTFEITEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMIIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK

Region:1-2009
Length:2009aa
Label:Full sequence
Reset:click