Input sequence

Protein name DNA-directed RNA polymerase II subunit RPB1
Organism Drosophila melanogaster Length 1887
Disorder content 23.7% ProS content 8.7%
IDEAL NA UniProt P04052

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP HMMER:SCOP SEG:LCR COILS:coiledCoil 0 1887 1-3 4-156 157-168 169-197 198-204 205-258 259-265 266-325 326-343 344-1258 1259-1267 1268-1272 1273-1478 1479-1481 1482-1887 4-156 169-197 205-258 266-325 344-1258 1273-1478 1-3 157-168 326-343 1259-1267 1482-1887 1-3 166-168 326-343 1491-1496 1506-1520 1527-1539 1546-1557 1566-1569 1578-1587 1605-1613 1683-1686 1718-1722 1784-1801 1838-1846 1852-1887 7-1486 5-1492 890-1071 1156-1286 348-506 17-345 517-683 722-814 1076-1154 822-888 11-346 348-513 516-684 709-815 822-1420 7-1467 2-1472 242-257 1495-1508 1529-1544 1546-1610 1626-1650 1665-1749 1755-1775 1788-1813 1832-1849 1860-1881 691-718 3h0gA(8-1472) 0.0 55.18% 3h0gA(6-1482) 0.0 54.89% PF04992(3-185) 3e-58 58.47% PF04990(1-130) 6e-54 77.44% PF00623(1-159) 5e-51 57.23% PF04997(5-326) 8e-44 37.61% PF04983(2-144) 2e-25 36.53% PF05000(14-106) 1e-24 61.29% PF04998(147-223) 1e-16 58.23% PF04998(1-67) 7e-13 47.76% PF04997 1.3e-163 554.1% PF00623 2.5e-110 377.1% PF04983 1.2e-79 275.2% PF05000 2.6e-53 187.7% PF04998 4.6e-150 509.1% 1i3qA(6-1414) 0.0 51.16% e.29.1 0.0 1770.0%

Sequence

MSTPTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNP
KIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQ
PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM
IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRF
YGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPT
PGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPT
VKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQ
IFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDR
ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENK
FQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEF
KAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET
DPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTP
SMTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSS
PGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYAST
TPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSP
NSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQY
SPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSP
SSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMY
SPTAPSHYSPTSPAYSPSSPTFEESED

Region:1-1887
Length:1887aa
Label:Full sequence
Reset:click