Input sequence

Protein name RNA polymerase sigma factor RpoD
Organism EColi Length 613
Disorder content 14.2% ProS content 3.9%
IDEAL NA UniProt P00579

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR COILS:coiledCoil 0 613 1-5 6-60 61-93 94-166 167-212 213-610 611-613 6-60 94-166 213-610 1-5 61-93 167-212 611-613 81-93 167-171 210-212 611-613 6-609 214-609 6-149 144-347 458-531 6-69 548-599 379-451 96-126 1-81 95-131 137-348 379-449 453-535 547-600 114-446 93-125 450-508 545-601 113-446 452-526 509-613 72-81 188-209 323-350 358-385 4jk1X(1-517) 0.0 85.43% 4jk1X(122-517) 2e-122 100.0% 4jk1X(1-114) 3e-33 79.17% PF04546(7-208) 1e-20 39.22% PF04539(1-74) 2e-14 51.35% PF03979(6-69) 2e-14 65.62% PF04545(2-49) 4e-06 59.62% PF04542(1-69) 5e-06 39.73% PF00140(1-31) 0.0004 67.74% PF03979 2e-42 151.5% PF00140 2.7e-15 61.4% PF04546 8.7e-126 428.5% PF04542 2e-28 105.0% PF04539 2.2e-41 148.1% PF04545 1.1e-22 85.9% 1sigA(2-305) 8e-97 88.89% 1iw7F3(3-35) 0.0001 48.48% 1iw7F1(1-61) 2e-16 59.02% 1ku3A(3-59) 3e-12 57.89% a.177.1 5.5e-133 452.8% a.4.13 6.5e-24 80.5% a.4.13 1.8e-26 95.2%

Sequence

MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH
VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR
SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD

Region:1-613
Length:613aa
Label:Full sequence
Reset:click