Input sequence

Protein name Sodium channel protein type 11 subunit alpha
Organism Rattus norvegicus Length 1765
Disorder content 19.2% ProS content 13.9%
IDEAL NA UniProt O88457

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR COILS:coiledCoil TMHMM:TMhelix 0 1765 1-2 3-29 30-63 64-70 71-75 76-429 430-526 527-797 798-813 814-847 848-990 991-1316 1317-1321 1322-1326 1327-1683 1684-1691 1692-1737 1738-1765 3-29 64-70 76-429 527-797 814-847 991-1316 1327-1683 1692-1737 1-2 30-63 71-75 430-526 798-813 848-990 1322-1326 1684-1691 1738-1765 1-2 30-41 51-63 71-75 430-526 798-804 861-924 965-979 1322-1326 1689-1691 1738-1751 1758-1765 1588-1728 1301-1321 1588-1730 1301-1321 1072-1287 160-394 1380-1583 610-785 818-1044 158-394 606-797 811-1044 1070-1287 1380-1583 1341-1465 568-675 1030-1123 172-273 116-403 572-806 974-1296 1299-1592 371-378 438-449 472-484 787-802 1125-1136 1415-1427 1682-1693 398-429 125-147 160-182 192-214 221-243 253-275 368-387 572-591 604-626 698-720 741-760 775-797 1034-1053 1073-1092 1099-1121 1144-1178 1223-1245 1265-1287 1343-1365 1380-1400 1407-1429 1476-1498 1510-1532 1559-1581 4dckA(1-141) 9e-48 68.09% 1byyA(1-21) 0.0002 95.24% 4dckA(1-143) 9e-38 67.13% 1byyA(1-21) 1e-05 95.24% PF00520(3-198) 1e-29 38.12% PF00520(3-198) 4e-25 33.33% PF00520(1-198) 1e-24 37.21% PF00520(5-186) 4e-20 34.78% PF06512(6-219) 2e-09 25.64% PF00520 7.9e-69 239.3% PF00520 6.4e-58 203.0% PF06512 1.9e-132 450.6% PF00520 2.6e-67 234.2% PF00520 3.6e-63 220.5% 1orsC(1-119) 2e-11 18.25% 1orsC(2-102) 1e-10 13.76% 1orsC(2-92) 1e-09 14.89% 2e9xC1(1-103) 1e-09 11.5% f.14.1 1.3e-27 95.9% f.14.1 4.4e-26 90.6% f.14.1 8.3e-37 127.9% f.14.1 1.8e-35 123.2%

Sequence

MEERYYPVIFPDERNFRPFTSDSLAAIEKRIAIQKERKKSKDKAAAEPQPRPQLDLKASR
KLPKLYGDIPPELVAKPLEDLDPFYKDHKTFMVLNKKRTIYRFSAKRALFILGPFNPLRS
LMIRISVHSVFSMFIICTVIINCMFMANSMERSFDNDIPEYVFIGIYILEAVIKILARGF
IVDEFSFLRDPWNWLDFIVIGTAIATCFPGSQVNLSALRTFRVFRALKAISVISGLKVIV
GALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMGILNQKCIKHNCGPNPASNKDCFEKEK
DSEDFIMCGTWLGSRPCPNGSTCDKTTLNPDNNYTKFDNFGWSFLAMFRVMTQDSWERLY
RQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQ
QLLREEKEALVAMGIDRSSLNSLQASSFSPKKRKFFGSKTRKSFFMRGSKTAQASASDSE
DDASKNPQLLEQTKRLSQNLPVDLFDEHVDPLHRQRALSAVSILTITMQEQEKFQEPCFP
CGKNLASKYLVWDCSPQWLCIKKVLRTIMTDPFTELAITICIIINTVFLAVEHHNMDDNL
KTILKIGNWVFTGIFIAEMCLKIIALDPYHYFRHGWNVFDSIVALLSLADVLYNTLSDNN
RSFLASLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIFSVVGMRLFGT
KFNKTAYATQERPRRRWHMDNFYHSFLVVFRILCGEWIENMWGCMQDMDGSPLCIIVFVL
IMVIGKLVVLNLFIALLLNSFSNEEKDGSLEGETRKTKVQLALDRFRRAFSFMLHALQSF
CCKKCRRKNSPKPKETTESFAGENKDSILPDARPWKEYDTDMALYTGQAGAPLAPLAEVE
DDVEYCGEGGALPTSQHSAGVQAGDLPPETKQLTSPDDQGVEMEVFSEEDLHLSIQSPRK
KSDAVSMLSECSTIDLNDIFRNLQKTVSPKKQPDRCFPKGLSCHFLCHKTDKRKSPWVLW
WNIRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVNLPSRPQVEKLLRCTDNIFTFIFL
LEMILKWVAFGFRRYFTSAWCWLDFLIVVVSVLSLMNLPSLKSFRTLRALRPLRALSQFE
GMKVVVYALISAIPAILNVLLVCLIFWLVFCILGVNLFSGKFGRCINGTDINMYLDFTEV
PNRSQCNISNYSWKVPQVNFDNVGNAYLALLQVATYKGWLEIMNAAVDSREKDEQPDFEA
NLYAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDIFMTEEQKKYYNAMKKLG
TKKPQKPIPRPLNKCQAFVFDLVTSQVFDVIILGLIVLNMIIMMAESADQPKDVKKTFDI
LNIAFVVIFTIECLIKVFALRQHYFTNGWNLFDCVVVVLSIISTLVSRLEDSDISFPPTL
FRVVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMSWFSK
VKKGSGIDDIFNFETFTGSMLCLFQITTSAGWDTLLNPMLEAKEHCNSSSQDSCQQPQIA
VVYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFEIFYEVWEKFDPEASQF
IQYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVMGDRLHCMDVLFAFTTRVLGDSSGL
DTMKTMMEEKFMEANPFKKLYEPIVTTTKRKEEEQGAAVIQRAYRKHMEKMVKLRLKDRS
SSSHQVFCNGDLSSLDVAKVKVHND

Region:1-1765
Length:1765aa
Label:Full sequence
Reset:click