Input sequence

Protein name Collagen alpha-1(XXVII) chain A
Organism Danio rerio Length 1783
Disorder content 77.0% ProS content 63.8%
IDEAL NA UniProt C7DZK3

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 1783 1-19 20-39 40-43 44-52 53-60 61-244 245-1586 1587-1783 20-39 44-52 61-244 1587-1783 1-19 40-43 53-60 245-1586 1-19 40-43 251-282 292-299 309-317 407-410 448-452 466-471 509-517 528-543 550-1560 1572-1586 1608-1783 1608-1783 43-228 1605-1782 552-610 635-694 698-757 761-820 821-880 881-940 941-1000 1007-1066 1070-1129 1133-1192 1196-1255 1256-1316 1317-1376 1377-1436 1437-1496 1497-1556 1605-1782 1597-1728 42-230 87-238 3-19 242-279 346-359 390-415 566-599 616-633 635-662 701-722 734-752 803-845 854-890 956-1004 1007-1025 1055-1073 1097-1130 1148-1163 1168-1184 1241-1262 1305-1320 1322-1350 1395-1410 1461-1494 1497-1515 1530-1552 20-39 4ae2A(1-212) 3e-22 32.86% 4ae2A(1-212) 4e-27 31.13% 2uurA(12-207) 4e-05 16.42% PF01410(1-209) 3e-25 36.79% PF01391 1.1e-10 46.1% PF01391 1.7e-12 52.1% PF01391 6.2e-12 50.3% PF01391 1.1e-11 49.4% PF01391 1.8e-12 52.0% PF01391 9.2e-09 39.7% PF01391 7e-12 50.1% PF01391 1.2e-12 52.6% PF01391 1.5e-10 45.6% PF01391 1.9e-10 45.3% PF01391 3.4e-08 37.8% PF01391 6.5e-08 36.9% PF01391 2.2e-08 38.5% PF01391 2.8e-10 44.7% PF01391 1.1e-06 32.8% PF01391 5.8e-08 37.1% PF01410 8.2e-25 93.0% 1j83A(26-174) 4e-15 8.07% 1z78A1(4-203) 3e-13 12.75% b.29.1 2.9e-13 40.8%

Sequence

MNLATRRRVRRTSRLVAKRALLLCILLYCTSFGFTQVLFEDVDVLQRLALRAELGSRAVP
AGVISLRSGVILTTRARVTTPTRSLFPPELFWNCTIILSVRSHRLNSAFLFSVLSGNRIQ
LGLEISPGKLTLHAGPGNAATFLYNLHDGRWHHLAFVINGRSVTLHSPCSESDSGVTQEL
PVLPERLNPRGTFRLGGSSALLPGVVPFEGAVCQFDVVPSAQAQQNICSAIRRQCRENDT
YRPAPPALLPLPSRHAPPLLAHTLPPNRTFTFTPTNFLLAPVNGAGGSSSVRMSDGVRPK
PSSTTPPPLALMQTGIDAPLSLSLVTHKPSLRTPKPTASKPGVWLTPTKPARPKPTPGKA
SPKLNVSKSFGPKPTARLAASKLGSKAIGPKPTPLKPSKPVKKPTSVPKPNPTKNASIGP
RPTNSNKKQNAILKPLPAPKPTVPKRPSPTNKKPLQPKNKSHTTPLTPKSTLAPNSTSKK
PLPTLKSTSFTTAAPNKPPKTLETPKVNPDKSKTPVPYSTPRTPRFSIQSVTLPAFDDFQ
SFEVEPTRFSLLVGAPGLKGDQGESGLPGPPGKPGQPGMRGPRGPPGPHGKPGRPGPTGL
KGKKGDPGLSPGKAPKGDKGDVGLPGPVGLVGVEGRKGQKGHPGPPGLPGEPGEQGPVGE
AGAKGYPGRQGLPGPIGPVGPKGARGFIGIPGLFGLPGADGERGSPGPPGKRGKMGRPGF
PGDFGERGPPGLDGEPGVIGAPGPPGVLGLIGDMGPAGTVGVPGLNGLKGVPGNMGESGL
KGDKGDVGLPGEQGEIGFQGDKGVQGLPGLPGPRGKPGPQGKTGEIGPSGLPGPPGPEGF
PGDIGKPGLNGPEGPKGKPGARGLPGPRGAAGREGDEGPLGPPGPFGLEGQMGSKGFPGA
LGLEGVKGEQGVTGKAGPMGERGLVGFIGPGGEAGLAGEKGDRGEMGLPGPPGEKGSTGH
PGTPGEGGPPGPPGSPGSPGSRGPIGIRGPKGRRGPRGPDGVPGEIGTEGKKGPDGPPGK
IGFPGHAGKIGESGEVGPKGFPGIQGPSGATGDKGIAGEPGPSGPPGTLGPQGNPGPKGP
AGKVGDSGLPGEPGEKGSIGLAGNAGAAGLIGARGEPGLEGEAGPAGPDGTKGEKGDMGT
EGEQGVRGDPGIKGKDGPPGDPGLTGVRGPEGKSGKSGERGKPGLKGAKGNIGHLGETGS
VGKIGPIGTTGPKGSRGTIGHAGAPGRMGLQGDPGISGYEGHKGPQGPIGPPGPKGAKGE
QGDDGKVEGPTGAPGLRGPVGKRGDRGEPGDPGYVGQQGVDGLRGKPGAPGLPGDPGPRG
TQGPKGSKGEQGQKGKQGQQGERGSRGSPGVVGLPGPRGTVGREGREGFPGTDGLAGKDG
SRGTPGDQGDDGEFGLPGKPGAPGKVGVIGLPGPQGSFGPKGERGLPGHPGPSGKRGFKG
GMGLPGPQGDRGSKGQPGDIGEPGFPGMLGMFGPKGPPGDFGPKGIQGPKGPQGNMGRGG
LAGPVGVIGPIGNPGSRGDTGNKGELGVQGPRGAPGPRGPPGLPGPPGIPLAMNQDFGLG
VVQPVFRETHTQKIEGRGLLDMPMLDQAPEILRTLDYLSSLVHSLKNPLGTRDHPARLCR
DLHDCRDTLYDGTYWIDPNLGCSSDSIEVMCNFSSGGRTCLRPITTAKLEFSVGRVQMNF
LHLLSAGAEQRITIHCLNVTIWSHAPNQPPSQNAVQFHSWIGEVLEPDVLEDTCWQLNGR
WQHADFLFRVLDPALLPVVRISNLPKVMPSSRFHLEVGPVCFL

Region:1-1783
Length:1783aa
Label:Full sequence
Reset:click