Input sequence

Protein name Collagen alpha-1(XVII) chain
Organism Bos taurus Length 1473
Disorder content 91.7% ProS content 70.1%
IDEAL NA UniProt A6QPB3

Prediction

Order Disorder ProS RPS-BLAST:PDB HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP SEG:LCR COILS:coiledCoil TMHMM:TMhelix 0 1473 1-162 163-168 169-206 207-226 227-231 232-334 335-374 375-379 380-473 474-519 520-1473 163-168 207-226 335-374 474-519 1-162 169-206 232-334 380-473 520-1473 1-42 52-68 98-162 180-197 232-240 255-274 280-289 304-312 380-473 526-552 563-643 649-859 876-899 907-984 1002-1006 1020-1028 1036-1054 1060-1066 1092-1135 1146-1169 1184-1190 1202-1240 1247-1282 1319-1325 1330-1359 1373-1473 571-617 582-641 653-712 737-796 797-856 569-615 12-26 315-333 432-459 471-492 618-650 656-678 688-707 728-743 769-791 814-848 854-866 877-900 912-933 939-994 1000-1019 1043-1053 1146-1158 1178-1197 1214-1230 1265-1277 1283-1324 1381-1394 1432-1451 492-519 474-496 2pneA(1-47) 6e-07 36.17% PF01391 1.7e-09 42.1% PF01391 2.9e-12 51.4% PF01391 7.7e-12 49.9% PF01391 5.7e-05 11.7% 1af0A1(1-47) 0.0004 10.64%

Sequence

MDITQKNKRDGTEVTERIITETVTTRLTSLPPKGGTSNGYAKTGSLGGGSRLEKQSLTHG
SSGYINSSGSLRGNASTSSYRRAHSPASTLPNSPGSTFERKTHVTRHGTYEGSSSGNSSP
EYPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRNS
SNTLPIPKKGTVETKVVTASSQSVSGTYDTTILDANLPSHVWSSTLPAGSSMGTYHNNIT
TQSSSLLNTNAYSAGSVFGVPNNMASCSATLQPGISTSSSVFGMQNNLAPSSSTLSHGMA
ATSTAYGVKKNMPQSPTAVSTGVSTSAASTTNVQNDDLLHKDCKFLILEKDNTPAKKEME
LLIMTKDSGKVFTASPASVAATSFSEDTLKKEKQAAYTDTYLVSEANGDVKTVTAKGNGA
SADIHGYDHRRGGGGGGGSGGALGSGAAGGGGKGSWGAAPTWCPCGSWCSWWKWLLGLLL
TWLLLLGLLFGLIALAEEVRKLKARVEELEKMRGRLSYNEKMERSSQDSVQGVAPRLGEG
LGKSELDDYNLEDVWQFMKVRLMTEQENGNLRGSPGPKGDMGVQGPKGDRGFPGTPGIPG
PLGHQGPEGPKGQKGNVGEPGMEGPMGQRGREGPMGPRGEPGPPGFGEKGDRGDAGKPGI
PGPPGVPGSVGPKGSIGPQGLRGEVGLPGIKGDKGPMGPPGPKGDQGEKGPRGLTGEPGL
KGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLPGMPGTRGLPGPSGDPGKPGLTGPQGP
QGIPGTPGRPGVKGEPGAPGKIMTSEGSSTITVPGPPGPPGAMGPPGPPGAPGPVGPAGL
PGQQGPRGEPGLAGESFMGSSSSFSEVLSTQGIDLRGPPGPPGPPGPPGEGLPGPPGPPG
SLLTSSETFFSGPPGPPGPPGPKGDQGPPGPRGHQGERGFPGLSGSGSSSLGLNLQGPPG
PPGPQGPKGDKGDPGVPGAPGIPGGPSRGGSSSSTTFMQGPPGPPGPPGPPGSLSSSGLE
IQQYISDYMQSDSIRPYLSGVQGPPGPPGPPGPVTTITGETFNYSELASLVVSYLQTSGY
NIGTSSTSISSEDILAALRRDDVRQYLQQYLMPQGAGGDWFLQSLDYAELSNRILSYMSS
TGVSIGLPGPPGPPGLPGTSYEELLSLLQGSEFRGIVGPPGPPGPPGLPGSSWSSISTED
LSSYLQTAGLSSIPGPPGPPGPPGPRGPPGISGALATYAAENSDSFRSELISYLTSPDVR
SFIVGPPGPPGPQGPPGDTRLVSTDSSYSRSGSSSSFSRDTSYSSSMGIGGASGGSLGEA
GAFGMDMGRGYGAAAESGMYGGNGRFGTSFAGGLDYNELAVRVSESLQRQGLLQGMAYTV
QGPPGRPGPQGPPGISKIFSAYSNVTEDLMDFFRTYGAIPGPPGQKGEMGIPGPKGERGP
AGPPGPRGHKGEKGDKGDQFYIGRRRRSIAVKP

Region:1-1473
Length:1473aa
Label:Full sequence
Reset:click