Input sequence

Protein name Collagen alpha-5(VI) chain
Organism Mus musculus Length 2640
Disorder content 14.2% ProS content 13.9%
IDEAL NA UniProt A6H584

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB BLAST:PDB BLAST:PDB BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR 0 2640 1-25 26-223 224-250 251-454 455-460 461-566 567-571 572-1234 1235-1239 1240-1440 1441-1505 1506-1513 1514-1662 1663-1696 1697-1766 1767-1888 1889-1892 1893-2296 2297-2309 2310-2620 2621-2640 26-223 251-454 461-566 572-1234 1240-1440 1506-1513 1663-1696 1767-1888 1893-2296 2310-2620 1-25 224-250 455-460 1441-1505 1514-1662 1697-1766 2297-2309 2621-2640 1-25 224-250 455-460 1441-1505 1514-1662 1697-1766 2297-2309 2621-2622 2631-2640 472-834 656-1024 264-649 30-196 1035-1212 1996-2171 658-836 845-1024 1995-2193 2320-2497 471-650 267-455 1035-1218 29-211 1791-2014 1468-1605 660-807 846-997 474-622 30-202 268-449 474-644 660-829 846-1019 1037-1210 1433-1492 1493-1552 1560-1619 1620-1679 1703-1762 1790-1951 1996-2171 2321-2519 647-839 836-1031 1984-2204 2320-2531 1782-1907 470-649 1031-1215 26-207 260-455 1511-1608 1469-1532 28-210 261-447 472-652 653-834 839-1025 1035-1218 1223-1419 1783-1980 1989-2201 2314-2531 142-154 222-248 1440-1466 1493-1508 1535-1552 1556-1569 1610-1683 1711-1730 1739-1757 4cn9A(8-387) 5e-33 31.61% 4cn9A(6-387) 9e-31 29.92% 4cn9A(6-387) 3e-21 25.8% 4igiA(3-169) 7e-12 30.18% 4igiA(1-181) 1e-10 28.96% 1idoA(3-168) 1e-06 25.14% 1lfaA(2-182) 8e-44 20.22% 1lfaA(3-180) 7e-35 21.2% 1lfaA(3-182) 1e-16 15.84% 1lfaA(3-158) 3e-12 13.89% 1n3yA(1-188) 4e-43 22.34% 4igiA(2-189) 1e-20 26.84% 4igiA(1-183) 5e-20 25.27% 4igiA(2-184) 1e-19 27.57% 1rrkA(4-223) 4e-08 13.16% 2pneA(5-79) 3e-07 23.19% PF00092(1-148) 9e-12 33.55% PF00092(1-148) 6e-07 31.37% PF00092(1-148) 8e-07 30.26% PF00092 1.1e-32 119.1% PF00092 2.5e-29 108.0% PF00092 5.1e-51 180.1% PF00092 1.5e-56 198.5% PF00092 5.4e-50 176.7% PF00092 7e-27 99.9% PF01391 6.7e-10 43.5% PF01391 3.2e-10 44.6% PF01391 6.1e-08 37.0% PF01391 7.8e-07 33.3% PF01391 1.9e-08 38.7% PF00092 2e-14 58.5% PF00092 1.3e-22 85.8% PF00092 4e-20 77.5% 1auqA(4-203) 3e-30 18.91% 1auqA(7-205) 1e-27 15.84% 1auqA(2-208) 2e-20 14.6% 1auqA(16-205) 3e-16 12.26% 1auqA(9-128) 4e-10 23.02% 1ao3A(2-187) 9e-28 26.34% 1ao3A(1-187) 2e-14 20.63% 1ao3A(2-184) 3e-13 21.51% 1aoxA(1-200) 4e-15 18.18% 1af0A1(5-114) 0.0002 16.36% 1af0A1(158-221) 0.0004 12.5% c.62.1 2.9e-37 122.2% c.62.1 7.1e-40 132.4% c.62.1 1.8e-50 165.6% c.62.1 6.8e-53 178.4% c.62.1 2.6e-49 163.6% c.62.1 3e-36 118.9% c.62.1 7.4e-12 39.4% c.62.1 3.8e-29 98.4% c.62.1 2.9e-36 122.4% c.62.1 2.5e-33 112.5%

Sequence

MKLRLIAFVLILWTETLADQSPGPGPEYADVVFLVDSSNYLGIKSFPFVRTFLNRMISSL
PIEANKYRVALAQYSDALHNEFQLGTFKNRNPMLNHLKKNFGFIGGSLKIGNALQEAHRT
YFSAPTNGRDKKQFPPILVVLASAESEDDVEEAAKALREDGVKIISVGVQKASEENLKAM
ATSQFHFNLRTARDLGMFAPNMTRIIKDVTQYREGTTVDLITAVAPTTPAAPATPAAPTI
PAALTTAANHVDKTVPFPTSCQKDSLADLIFLVDESVGTTQNLRDLQNFLENVTSSVDVK
DNCMRLGLMSFSDRAQTISSLRSSANQSEFQQQIQKLSLQTGASNVGAAIEQMRKEGFSE
SSGSRKAQGVPQIAVLVTHRASDDMVREAALDLRLEGVTMFAMGIEGANNTQLEDIVSYP
SRQSISTHSSYSHLESYSGNFLKKIRNEIWTQVSTRAEQMELDKTGCVDTKEADIYFLID
GSSSIRKKEFEQIQIFMSSVIDMFPIGPNKVRVGVVQYSHKNEVEFPVSRYTDGIDLKKA
VFNIKQLKGLTFTGKALDFILPLIKKGKTERTDRAPCYLIVLTDGKSNDSVLEPANRLRA
EQITIHAIGIGEANKTQLRQIAGKDERVNFGQNFDSLKSIKNEIVHRICSEKGCEDMKAD
IMFLVDSSGSIGPTNFETMKTFMKNLVGKIQIGADRSQVGVVQFSDYNREEFQLNKYSTH
EEIYAAIDRMSPINRNTLTGGALTFVNEYFDLSKGGRPQVRKFLILLTDGKAQDEVGGPA
TALRSKSVTIFSVGVYGANRAQLEEISGDGSLVFHVENFDHLKAIESKLIFRVCALHDCK
RIELLDIVFVLDHSGSIGPREQESMMNLTIHLVKKADVGRDRVQIGALTYSNHPEILFYL
NTYSSGSAIAEHLRRPRDTGGETYTAKALQHSNVLFTEEHGSRLTQNVRQLMIVITDGVS
HDRDKLDEAARELRDKGITIFAVGVGNANQDELETMAGKKENTVHVDNFDKLRDIYLPLQ
ETLCNNSQETCNLPEADVIFLCDGSDMVSDSEFVTMTTFLSDLIDNFDIESQRMKIGMAQ
YGSRYQEIIELESSLNKTQWKSQVHSVAQSKGLPRLDFALKHVSDMFDPSVGGRRNAGVP
QTLVVITSSSPRYDVTDAVKVLKDLGICVLALGIGDVYKEQLLPITGNSEKIITFRDFNK
LKNVDVKKRMVREICQSCGKANCFVDVVVGFDISTHRQGQPLFQGHPRLESYLPGILEDI
TSIRGVSCGAGAEAQVSLAFKVNSDQEFPAKFQIYQKAAFDSLLHVTVRGPTHLDAPFLQ
SLWDMFEERSASRGQVLLIFSDGLQGESITLLERQSDRLREAGLDALLVVSLNTFGHDEF
SSFEFGKGFDYRTQLTIGMLDLGKTLSQYLGNIAERACCCTFCKCPGIPGPHGTRGLQAS
KGSSGPKGSRGHRGEDGDPGRRGEIGLQGDRGVVGCPGTRGQKGVKGFSGAQGEHGEDGL
DGLDGEEGFYGFRGGKGQKGDPGNQGYPGIRGAAGEDGEKGFPGDPGDPGKDSNIKGQKG
EKGERGRQGITGQKGTHGRPSSKGSRGMEGQRGPQGPSGQAGNPGPQGTQGPEGLQGSQG
SSGNRGGKGDKGSQGYQGPQGSPGPAGPRGDIGRPGFGGRKGEPGVPGGPGPVGPPGQRG
KQGDYGIPGYGQTGRKGVKGPTGFPGDPGQKGDAGNPGIPGGPGPKGFKGLTLSQGLKGR
SGLQGSQGPPGRRGPKGTAGQPIYSPCELIQFLRDHSLIFTDKCPVYPTELVFALDQSSG
ITERRFNETRDTITSIVSDLNIRENNCPVGARVAVVSYDSDTSYLIRGSDYHNKKHLLQL
LSQIKYQVPRKARDIGNAMRFVARNVFKRMSAGTNTRRVAVFFSNGQAASRASILTATME
LSALDISLAVFAYNERVFLDEAFGFDDTGTFQVIPVPPVGDYEPLEKLRRCTLCYDKCFP
NTCAEEPFFPENSYMDVAFLLDNSKNIASDDFQAVKALVSSVIDSFHITSNPSASESGDR
VALLSYSPSESSRRKGRVKTEFAFTTYDNQSIMKNYIYTSLQQLNGDATIGLALQWAMEG
LFLGTPNPRKHKVIIVISAGENHEEKEFVKTVALRAKCQGYVVFVISLGSTQRDEMEELA
SYPLDHHLIQLGRMYKPDLNYIVKFLKPFIYSVRRGFNQYPPPTLKDDCRLVELERGDTL
PHGLRLTAKLREVPESTISLADQELNAGKDSSFVLEDHRGDHLVYVPSQMLEPHKLVSHY
GNDRESVAMASLTSEHESHGREELGLAHEPGDASLQEYYMDVAFLIDASQRVGGRNEFKE
VRTLITSVLDYFHIAPAPLTSVLGDRVAVLTYSPPGYLPNTEECPVYLEFDLVTYNTVHQ
MKHHLQESLQQLNGDVFIGHALQWTVDNVFVGTPNLRKNKVIFIVTAGETNPLDKEVLRN
ASLRAKCQGYSIFVFSFGPIHNDMELEELASHPLDHHLVRLGRVHRPDLDYVIKFIKPFV
HSIRRAINKYPGRDLQAKCDNLTFPGPENAGTEDSALLIPEVYRIEAGENELSGDSGSQE
QHFFLLGNSHGNHSESTADLMRQLYLLLSSGELMVNDKEEPCSAETPAPVNSKQDGEDAR

Region:1-2640
Length:2640aa
Label:Full sequence
Reset:click