Input sequence

Protein name RNA polymerase II-associated protein 1
Organism Bos taurus Length 1395
Disorder content 27.2% ProS content 14.6%
IDEAL NA UniProt A0JN53

Prediction

Order Disorder ProS RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam SEG:LCR 0 1395 1-260 261-266 267-351 352-503 504-524 525-600 601-606 607-612 613-748 749-752 753-882 883-886 887-1387 1388-1395 261-266 352-503 525-600 613-748 753-882 887-1387 1-260 267-351 504-524 607-612 1388-1395 1-35 56-63 81-100 106-121 127-139 147-155 224-260 267-285 312-341 506-513 1388-1395 358-421 225-266 224-272 354-425 62-79 375-384 435-454 460-472 496-522 725-734 745-758 827-844 889-904 954-969 1028-1047 1065-1077 1086-1099 1367-1383 PF08620(5-72) 4e-06 52.94% PF08621(2-43) 1e-05 52.38% PF08621 1.6e-21 82.1% PF08620 2.7e-37 134.5%

Sequence

MLSRPKPGESEVDLLRFQSQFLAAGATPAVQLVKKGSRRAGDANLEQPPLQDHRDVVMLD
SLPDLPPALVPAPPKRARPSPGHLLPEHEDPEERLHRHDQHITAVLTKIIERDTSSMPVN
LPVSSGVAFPPVFHRSQGRQGKPVTAGKRSIFAQEIAARRASGAKVSPVREVESILDPPE
SAMTCEALTPREWGSQPPWNSYSFQGPHLVTGKGLKGQEAEQEAQTIHEENVARLQALAP
EEILQEQQRLLAQLDPSLVAFLKSHSCTREQAEEKATREQRPGRPSAEVIGKEAIAPTSA
SVPRQENELEPETPALALPVTPQKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFS
LQGELLAPDMDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVIGR
AQAGEFGDRLVGSVLHLLLDAGFLFLLRFSLDDRVDGVIAAAVRALRALLVAPGDEELLD
STFSWYHGALMFALMPSQEDKEDEDEDEEPPAEKAKTKSPEEGNRPPSDLARHDIIKGLL
ATNLLPRLRYVLEVTCPGPSVVLDILTVLIRLARHSLESATRVLECPRLVETVVREFLPT
SWSPMGSGPTSSLHRVPCAPAMKLLRVLASASRNIAARLLSGFDLRSRLSRFIAEDPQDL
ALPLEEAETLSTEAFRLWAVAASYGLGSDLYRELYPVLMQALQDVPKELSSPPPRPLAVQ
RIASLLTLLTQLTLAAGHIAPEHNSHSAEASLLAGSSSVTWTQVSGLQPLVEPCLRQTLK
LLPRPEMWSALGPVPTACLLFLDAYYQAWSQQPGLCPEDWLQDMERLSEGLLLPLLKHPS
LGSLWDSLGCCSPLCNPQSCAVAPETISSLASLGCAGGHPPLSLAGSASPFPFLTALLSL
LNTLGRIHKGLCGQLATVLAAPGLQDYFLRCVAPVAALHLTPFSAWALRHEYHLQYLALT
LAQRAATLQPPMSGTDAALCHGMALALLGRLLPGSEHLAHELMLSCVFRLEFLPERASGG
PEAADFSDRLSLGSGGDLGCGRGALLAQACQDLPSIRSCYLTHCSLARASLLASQALYRG
ELQRVPALLLPVPKEPLLPTDWPFLPLIQLYHRASDTPSGLPPADTVGTALRALQWVLVL
ESWRPRALWAVSPAARLARLMCVFLVDSELFRETPIQRLVAALLARLCQPEVLSNLNLDC
PLPGLTSFPDLYANFLEHFEAVSFGDHLFGALILLPLQRRFSVTLRLALFGEHVGALRAL
GLPLTQLPVSLECYTAPPEDNLALLQLYFRALVTGALRPRWCPVLYAVAVAHVNSFIFSQ
DPNNSDEIKAACRSMLQKTWLLTDEGLRQHLLHYKLPNSALPEGFELYPQLPPLRQQYLQ
KLRISGVLPNGVSDT

Region:1-1395
Length:1395aa
Label:Full sequence
Reset:click